When you load a file in Visual Studio 2008, the following dialog box may prompt:
This dialog box is not from SourceAnywhere Standalone. It is a Visual Studio warning. It occurs when the file you are loading contains a mix of Windows standard and non-standard line-endings.
You can ignore EndOfLine by disabling the Check for consistent line endings on load option in the Documents page (VS 2008 Tools->Options->Environment->Documents).